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Category: Python

PySpark Persistence

Published 2017-04-26 by Kevin Feasel

David Crook shows how to save data to disk from PySpark:

This is working on HDInsight v3.5 w/Spark 2.0 and Azure Data Lake Storage as the underlying storage system.  What is nice about this is that my cluster only has access to its cluster section of the folder structure.  I have the structure root/clusters/dasciencecluster.  This particular cluster starts at dasciencecluster, while other clusters may start somewhere else.  Therefor my data is saved to root/clusters/dasciencecluster/data/open_data/RF_Model.txt

It’s pretty easy to do, and the Scala code would look suspiciously similar.  The Java version of the code would be seven pages long.

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SQL Server ML Services

Published 2017-04-20 by Kevin Feasel

SQL Server R Services is now SQL Server Machine Learning Services and supports Python.  First, Nagesh Pabbisetty and Sumit Kumar talk about Python support:

The addition of Python builds on the foundation laid for R Services in SQL Server 2016 and extends that mechanism to include Python support for in-database analytics and machine learning. We are renaming R Services to Machine Learning Services, and R and Python are two options under this feature.

The Python integration in SQL Server provides several advantages:

  • Elimination of data movement: You no longer need to move data from the database to your Python application or model. Instead, you can build Python applications in the database. This eliminates barriers of security, compliance, governance, integrity, and a host of similar issues related to moving vast amounts of data around. This new capability brings Python to the data and runs code inside secure SQL Server using the proven extensibility mechanism built in SQL Server 2016.

  • Easy deployment: Once you have the Python model ready, deploying it in production is now as easy as embedding it in a T-SQL script, and then any SQL client application can take advantage of Python-based models and intelligence by a simple stored procedure call.

  • Enterprise-grade performance and scale: You can use SQL Server’s advanced capabilities like in-memory table and column store indexes with the high-performance scalable APIs in RevoScalePy package. RevoScalePy is modeled after RevoScaleR package in SQL Server R Services. Using these with the latest innovations in the open source Python world allows you to bring unparalleled selection, performance, and scale to your SQL Python applications.

  • Rich extensibility: You can install and run any of the latest open source Python packages in SQL Server to build deep learning and AI applications on huge amounts of data in SQL Server. Installing a Python package in SQL Server is as simple as installing a Python package on your local machine.

  • Wide availability at no additional costs: Python integration is available in all editions of SQL Server 2017, including the Express edition.

Nagesh Pabbisetty also announces Microsoft R Server 9.1:

We took the first step with Microsoft R Server 9.0, and this follow on release includes significant innovations such as:

  • New machine learning enhancements and inclusion of pre-trained cognitive models such as sentiment analysis & image featurizers

  • SQL Server Machine Learning Services with integrated Python in Preview

  • Enterprise grade operationalization with real-time scoring and dynamic scaling of VMs

  • Deep customer & ISV partnerships to deliver the right solutions to customers

  • A panoply of sources to help you get started with ease

And Joseph Sirosh indicates that AI is where the money is:

So today it’s my pleasure to announce the first RDBMS with built-in AI—a production-quality Community Technology Preview (CTP 2.0) of SQL Server 2017. In this preview release, we are introducing in-database support for a rich library of machine learning functions, and now for the first time Python support (in addition to R). SQL Server can also leverage NVIDIA GPU-accelerated computing through the Python/R interface to power even the most intensive deep-learning jobs on images, text, and other unstructured data. Developers can implement NVIDIA GPU-accelerated analytics and very sophisticated AI directly in the database server as stored procedures and gain orders of magnitude higher throughput. In addition, developers can use all the rich features of the database management system for concurrency, high-availability, encryption, security, and compliance to build and deploy robust enterprise-grade AI applications.

There’s a lot to digest here.

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Using h2o.ai On HDInsight

Published 2017-04-13 by Kevin Feasel

Xiaoyong Zhu shows how to set up h2o.ai on Azure HDInsight:

H2O Flow is an interactive web-based computational user interface where you can combine code execution, text, mathematics, plots and rich media into a single document, much like Jupyter Notebooks. With H2O Flow, you can capture, rerun, annotate, present, and share your workflow. H2O Flow allows you to use H2O interactively to import files, build models, and iteratively improve them. Based on your models, you can make predictions and add rich text to create vignettes of your work – all within Flow’s browser-based environment. In this blog, we will only focus on its visualization part.

H2O FLOW web service lives in the Spark driver and is routed through the HDInsight gateway, so it can only be accessed when the spark application/Notebook is running

You can click the available link in the Jupyter Notebook, or you can directly access this URL:

https://yourclustername-h2o.apps.azurehdinsight.net/flow/index.html

Setup is pretty easy.

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Datashader

Published 2017-03-24 by Kevin Feasel

John Mount is a bit jazzed when it comes to a new package:

I recently got back from Strata West 2017 (where I ran a very well received workshop on R and Spark). One thing that really stood out for me at the exhibition hall was Bokeh plus datashader from Continuum Analytics.

I had the privilege of having Peter Wang himself demonstrate datashaderfor me and answer a few of my questions.

I am so excited about datashader capabilities I literally will not wait for the functionality to be exposed in R through rbokeh. I am going to leave my usual knitr/rmarkdown world and dust off Jupyter Notebook just to use datashader plotting. This is worth trying, even for diehard R users.

For the moment, it looks like datashader is only available for Python, but it’s coming to R.

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U-SQL Custom Python Libraries

Published 2017-03-13 by Kevin Feasel

Saveen Reddy explains how to build a custom Python library and use it with U-SQL:

First, let’s talk about “zipimport”. Thanks to the adoption of PEP 273 – Python had the ability to import modules from ZIP files since Python 2.3. This ability is called “zipimport” and is a built-in feature of the Python’s existing import statement. Read the zipimport documentation now.

To review the basics.

  • You create a module (a .py file, etc.)

  • ZIP up the module into a .zip file

  • Add the path to the .zip file to sys.path

  • Then import the module

Read on for the step-by-step process.

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Building A Python Project Template

Published 2017-03-06 by Kevin Feasel

Henk Griffioen shows how to create a standardized project in Python, focusing on data science scenarios:

Project structures often organically grow to suit people’s needs, leading to different project structures within a team. You can consider yourself lucky if at some point in time you find, or someone in your team finds, a obscure blog post with a somewhat sane structure and enforces it in your team.

Many years ago I stumbled upon ProjectTemplate for R. Since then I’ve tried to get people to use a good project structure. More recently DrivenData (what’s in a name?) released their more generic Cookiecutter Data Science.

The main philosophies of those projects are:

  • A consistent and well-organized structure allows people to collaborate more easily.

  • Your analyses should be reproducible and your structure should enable that.

  • A projects starts from raw data that should never be edited; consider raw data immutable and only edit derived sources.

This is a set of prescriptions and focuses on the phase before the project actually kicks off.

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Prophet

Published 2017-03-01 by Kevin Feasel

Rodrigo Agundez looks at Prophet, Facebook’s new API for store sales forecasting:

The data is of a current client, therefore I won’t be disclosing any details of it.

Our models make forecasts for different shops of this company. In particular I took 2 shops, one which contains the easiest transactions to predict from all shops, and another with a somewhat more complicated history.

The data consists of real transactions since 2014. Data is daily with the target being the number of transactions executed during a day. There are missing dates in the data when the shop closed, for example New Year’s day and Christmas.

The holidays provided to the API are the same I use in our model. They contain from school vacations or large periods, to single holidays like Christmas Eve. In total, the data contains 46 different holidays.

It looks like Prophet has some limitations but can already make some nice predictions.

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Python + knitr

Published 2017-02-23 by Kevin Feasel

Steph Locke shows how to integrate Python code into knitr:

One of the nifty things about using R is that you can use it for many different purposes and even other languages!

If you want to use Python in your knitr docs or the newish RStudio R notebook functionality, you might encounter some fiddliness getting all the moving parts running on Windows. This is a quick knitr Python Windows setup checklist to make sure you don’t miss any important steps.

Between knitr, Zeppelin, and Jupyter, you should be able to find a cross-compatible notebook which works for you.

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Understanding Naive Bayes

Published 2016-12-16 by Kevin Feasel

Ahmet Taspinar explains the Naive Bayes classificiation algorithm and writes Python code to implement it:

Within Machine Learning many tasks are – or can be reformulated as – classification tasks.

In classification tasks we are trying to produce a model which can give the correlation between the input data $X$ and the class $C$ each input belongs to. This model is formed with the feature-values of the input-data. For example, the dataset contains datapoints belonging to the classes Apples, Pears and Oranges and based on the features of the datapoints (weight, color, size etc) we are trying to predict the class.

Ahmet has his entire post saved as a Jupyter notebook.

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Data Science Languages

Published 2016-12-12 by Kevin Feasel

Alessandro Piva provides preliminary metrics on language usage among self-described data scientists:

Programming is one of the five main competence areas at the base of the skill set for a Data Scientist, even if is not the most relevant in term of expertise (see What is the right mix of competences for Data Scientists?). Considering the results of the survey, that involved more than 200 Data Scientist worldwide until today, there isn’t a prevailing choice among the programming languages used during the data science’s activities. However, the choice appears to be addressed mainly to a limited set of alternatives: almost 96% of respondents affirm to use at least one of R, SQL or Python.

These results don’t surprise me much.  R has slightly more traction than Python, but the percentage of people using both is likely to increase.  SQL, meanwhile, is vital for getting data, and as we’re seeing in the Hadoop space, as data platform products get more mature, they tend to gravitate toward a SQL or SQL-like language.  Cf. Hive, Spark SQL, Phoenix, etc.

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