Category: Visualization

Hadley Wickham describes some of the decisions he made when putting together ggplot2:

In the examples above, we have seen some of the components that make up a plot:
• data and aesthetic mappings,
• geometric objects,
• scales, and
• facet specification.
We have also touched on two other components:
• statistical transformations, and
• the coordinate system.
Together, the data, mappings, statistical transformation, and geometric object form a layer. A plot may have multiple layers, for example, when we overlay a scatterplot with a smoothed line.

This isn’t an article about how to use ggplot2; rather, it’s an article about implementation decisions.  To that end, I think it’s useful to see some of the logic behind ggplot2’s decisions.

I’ve started reading Kieran Healy’s book, Data Visualization For Social Science.  He has a free draft available online, and it automatically builds nightly so you’re seeing the latest version.  From the preface:

This book is a hands-on introduction to the principles and practice of looking at and presenting data using R and ggplot. R is a powerful, widely used, and freely available programming language for data analysis. You may be interested in exploring ggplot after having used R before, or be entirely new to both R and ggplot and just want to graph your data. I do not assume you have any prior knowledge of R.

After installing the software we need, we begin with an overview of some basic principles of visualization. We focus not just on the aesthetic aspects of good plots, but on how their effectiveness is rooted in the way we perceive properties like length, absolute and relative size, orientation, shape, and color. We then learn how to produce and refine plots using ggplot2, a powerful, versatile, and widely-used visualization library for R (Wickham 2016a). The ggplot2 library implements a “grammar of graphics” (Wilkinson 2005). This approach gives us a coherent way to produce visualizations by expressing relationships between the attributes of data and their graphical representation.

Through a series of worked examples, you will learn how to build plots piece by piece, beginning with scatterplots and summaries of single variables, then moving on to more complex graphics. Topics covered include plotting continuous and categorical variables, layering information on graphics; faceting grouped data to produce effective “small multiple” plots; transforming data to easily produce visual summaries on the graph such as trend lines, linear fits, error ranges, and boxplots; creating maps, and also some alternatives to maps worth considering when presenting country- or state-level data. We will also cover cases where we are not working directly with a dataset, but rather with estimates from a statistical model. From there, we will explore the process of refining plots to accomplish common tasks such as highlighting key features of the data, labeling particular items of interest, annotating plots, and changing their overall appearance. Finally we will examine some strategies for presenting graphical results in different formats, and to different sorts of audiences.

I’m less than halfway through the book so far, but it is quite an approachable look at the ggplot2 library with a bit of discussion on what makes for quality graphics.

John MacKintosh shows how to create dot plots in ggplot2, and then he uses gganimate to turn it into an animated plot:

If you want to follow along (go on) then you should head over to Neil’s site, download the excel file and take a look at the “how to” guide on the same page. Existing R users are already likely to be shuddering at all the manual manipulation required.

For the first attempt, I followed Neil’s approach pretty closely, resulting in a lot of code to sort and group, although ggplot2 made the actual plotting much simpler. I shared my very first attempt ( produce with barely any ggplot2 code) which was quite good, but there were a few issues – the ins/ outs being coloured blue instead of grey, and overplotting of several points.

Click through for code and explanation.  H/T R-Bloggers