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Category: Python

Solving Linear Constraints with Python

Published 2021-11-19 by Kevin Feasel

Luke Menzies and Gavita Regunath create a schedule:

Linear optimisation (often referred to as linear programming) is not cutting edge or new. It has been around for a very long time. It was first introduced within the field of operational research during World War II, where it was used to help minimise costings. The method proposed for solving these problems is known as the simplex method, and it hasn’t changed much today. Although this method hasn’t changed significantly, what has changed significantly is the computing power and accessibility of this technique, allowing these methods to be used on very complex scenarios with almost a click of a button. Convenient libraries have allowed the intricate complexities of setting these problems up on a computer to be simplified.

Read on for an example of linear programming. This is something I’ve always enjoyed, but haven’t had many places to use this technique in my professional career. That said, shout out to everyone who’s ever used LINGO.

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Monotonic Constraints on Random Forests

Published 2021-11-15 by Kevin Feasel

Michael Mayer has some interesting R and Python code for us:

On ML competition platforms like Kaggle, complex and unintuitively behaving models dominate. In this respect, reality is completely different. There, the majority of models do not serve as pure prediction machines but rather as fruitful source of information. Furthermore, even if used as prediction machine, the users of the models might expect a certain degree of consistency when “playing” with input values.

A classic example are statistical house appraisal models. An additional bathroom or an additional square foot of ground area is expected to raise the appraisal, everything else being fixed (ceteris paribus). The user might lose trust in the model if the opposite happens.

One way to enforce such consistency is to monitor the signs of coefficients of a linear regression model. Another useful strategy is to impose monotonicity constraints on selected model effects.

Certain types of regression algorithm make this easy, but random forest? Not so much. That’s where Michael steps in.

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When to Start Using a Database with R or Python

Published 2021-11-12 by Kevin Feasel

Roel Hogervorst thinks about data sizes in R and Python:

Your dataset becomes so big and unwieldy that operations take a long time. How long is too long? That depends on you, I get annoyed if I don’ t get feedback within 20 seconds (and I love it when a program shows me a progress bar at that point, at least I know how long it will take!), your boundary may lay at some other point. When you reach that point of annoyance or point of no longer being able to do your work. You should improve your workflow.

I will show you how to do some speedups by using other R packages, in python moving from pandas to polars, or leveraging databases. I see some hesitancy about moving to a database for analytical work, and that is too bad. Bad for two reasons, one: it is super simple, two it will save you a lot of time.

I definitely agree with Roel’s bottom line here. Granted, part of that is domain knowledge, but databases are extremely good at handling data and both languages have plenty of database accessibility.

One last tip, though: if you’re on the data science or data analytics track, learn SQL. Yes, libraries like dbplyr in R or ORMs in Python can cover up a lot, but that comes at a cost, typically in terms of performance. Building these skills will make your life considerably easier.

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Document Classification in Python

Published 2021-11-01 by Kevin Feasel

Brendan Tierney performs a bit of document classification with scikit-learn and nltk:

Text mining is a popular topic for exploring what text you have in documents etc. Text mining and NLP can help you discover different patterns in the text like uncovering certain words or phases which are commonly used, to identifying certain patterns and linkages between different texts/documents. Combining this work on Text mining you can use Word Clouds, time-series analysis, etc to discover other aspects and patterns in the text. Check out my previous blog posts (post 1, post 2) on performing Text Mining on documents (manifestos from some of the political parties from the last two national government elections in Ireland). These two posts gives you a simple indication of what is possible.

We can build upon these Text Mining examples to include other machine learning algorithms like those for Classification. With Classification we want to predict or label a record or document to have a particular value. With Classification this could involve labeling a document as being positive or negative (movie or book reviews), or determining if a document is for a particular domain such as Technology, Sports, Entertainment, etc

Click through for a walkthrough of this process.

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GPU-Accelerated Analysis on Databricks using PyTorch + Huggingface

Published 2021-11-01 by Kevin Feasel

Srijith Rajamohan walks us through an example of sentiment analysis using the PyTorch and Huggingface libraries on Databricks:

Sentiment analysis is commonly used to analyze the sentiment present within a body of text, which could range from a review, an email or a tweet. Deep learning-based techniques are one of the most popular ways to perform such an analysis. However, these techniques tend to be very computationally intensive and often require the use of GPUs, depending on the architecture and the embeddings used. Huggingface (https://huggingface.co) has put together a framework with the transformers package that makes accessing these embeddings seamless and reproducible. In this work, I illustrate how to perform scalable sentiment analysis by using the Huggingface package within PyTorch and leveraging the ML runtimes and infrastructure on Databricks.

Click through for a description of the process, as well as a link to a notebook you can walk through yourself.

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DBScan for Clustering in Python

Published 2021-10-20 by Kevin Feasel

Brendan Tierney takes us through the DBScan algorithm:

Let’s illustrate the use of DBScan (Density Based Spatial Clustering of Applications with Noise), using the scikit-learn Python package, for a “manufactured” dataset. This example will illustrate how this density based algorithm works (See my other blog post which compares different Clustering algorithms for this same dataset). DBSCAN is better suited for datasets that have disproportional cluster sizes (or densities), and whose data can be separated in a non-linear fashion.

Click through for an interesting read on a dataset which is historically difficult to cluster (unless you know the general shape and translate everything to polar coordinates).

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Detecting Hard-to-Classify Data

Published 2021-10-12 by Kevin Feasel

Kaushal Mukherjee takes us through a new Python package:

The article explains the algorithm behind the recently introduced Python package named PyHard, based on the concept of Instance Space Analysis. It helps in assessing the quality of a dataset and identifying what are the instances which are hard/easy to classify. With the help of this algorithm we can separate out noisy instances. It also provides an interactive visualization tool to deep dive into the instance space.

Click through for the details. I’m going to wait for PyHard 2: PyHarder. Or maybe PyHardWithAVengeance. But it’ll all go downhill by the time we get to PyHard 5.

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Dataclasses in Python

Published 2021-10-08 by Kevin Feasel

Evan Seabrook takes us through a Python library:

If you’re really lucky, there will be a docstring for this function that outlines the structure of the parameter user, saving you from having to dig through the function and identify the possible keys that exist in parameter user.

The problem here is twofold:

1. Dictionaries in python are mutable and can have arbitrary schemas. 

a. This in itself isn’t a problem and can be a good thing, depending on your needs. Its usage, however, is really only enabled by the quality of the second point, which is:

2. You must rely on the documentation to know the structure, and the documentation must stay updated as the structure evolves.

Read on to see how the dataclass library can create a wrapper around dictionary objects.

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TensorFlow Fundamentals

Published 2021-10-08 by Kevin Feasel

Tanishka Garg starts a series on TensorFlow:

TensorFlow is an open-source end-to-end machine learning library. It is for preprocessing data, modeling data, and serving models (getting them into the hands of others).

It has a comprehensive, flexible ecosystem of tools, libraries, and community resources that lets researchers push the state-of-the-art in ML. And developers easily build and deploy ML-powered applications.

Read on for basic setup instructions and a primer on tensors.

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