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Category: R

Fun with Residual Plots

Published 2019-09-30 by Kevin Feasel

Nina Zumel explains why, when plotting residuals, you always put predictions on the X axis and residuals on the Y axis:

One reason that the proper residual graph (for a well fit model) should smooth out to the line y=0 is known as reversion to mediocrity, or regression to the mean.

Imagine that you have an ideal process that always produces a single value y. You don’t actually observe this “true value”; instead, what you observe is y plus (IID, zero mean) noise. You can build a “model” for this process that predicts the mean of the observations, in this case the value 0.1033149. Then you can calculate the residuals of your “model” in the usual way.

This post went in a direction I wasn’t expecting, and it was all the better for it.

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Topic Modeling

Published 2019-09-30 by Kevin Feasel

Federico Pascual has an article on topic modeling and topic classification:

Topic modeling is an unsupervised machine learning technique that’s capable of scanning a set of documents, detecting word and phrase patterns within them, and automatically clustering word groups and similar expressions that best characterize a set of documents. It’s known as ‘unsupervised’ machine learning because it doesn’t require a predefined list of tags or training data that’s been previously classified by humans.

Since topic modeling doesn’t require training, it’s a quick and easy way to start analyzing your data. However, you can’t guarantee you’ll receive accurate results, which is why many businesses opt to invest time training a topic classification model.

The article is long but worth the read, with examples in Python and additional notes for R.

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Record Transformation with cdata

Published 2019-09-24 by Kevin Feasel

John Mount shows off one of the advantages of using cdata to define data-driven record transformation specifications:

We have a tutorial on how to design such transforms by writing down the shape your incoming data records are arranged in, and also the shape you wish your outgoing data records to be arranged in.

This simple data transform is in fact not a single pivot/un-pivot, as the result records spread data-values over multiple rows and multiple columns at the same time. We call the transform simple, because from a user point of view: it takes records of one form to another form (with the details left to the implementation).

Read the whole thing.

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Linear Regression in Power BI

Published 2019-09-23 by Kevin Feasel

Joseph Yeates shows how to implement linear regression in Power BI:

The goal of a simple linear model is to fit a line onto this plot to summarize the shape of the data using the equation above.

The “a” value is the slope of the fitted line (rise over run) and the “b” value is the intercept on the y-axis (when x is equal to zero).

In the gapminder example, the life expectancy column was assigned as the “y” variable, as it is the outcome that we are interested in predicting or understanding. The year1950 column was assigned as the “x” variable, as it is what we are using to try and measure the change in life expectancy.

This is a little more complicated than adding a regression line to a scatterplot (the “normal” way to do linear regression with Power BI) but this method lets you work with the outputs in a way that the normal method doesn’t.

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WVPlots

Published 2019-09-17 by Kevin Feasel

Nina Zumel announces a new version of WVPlots on CRAN:

WVPlots was originally a catch-all package of ggplot2 visualizations that we at Win-Vector tended to use repeatedly, and wanted to turn into “one-liners.” A consequence of this is that the older visualizations had our preferred color schemes hard-coded in. More recent additions to the package sometimes had palette or color controls, but not in a consistent way. Making color controls more consistent has been a “todo” for a while—one that I’d been putting off. A recent request from user Brice Richard (thanks Brice!) has pushed me to finally make the changes.

Click through to see what’s changed and for an example vignette.

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Icon Maps in R

Published 2019-09-13 by Kevin Feasel

Laura Ellis shows how you can build maps full of little icons:

That was ok, but we should try to make the images more aesthetically pleasing using the magick package. We make each image transparent with the image_transparent() function. We can also make the resulting image a specific color with image_colorize().

I then saved the images using the image_write() function. I manually re-uploaded them to GH.

This was a great example of where laying icons on a map works.

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R User Salaries By Country

Published 2019-09-11 by Kevin Feasel

Capri Granville shares a chart showing a box plot of salaries for professional R users by country:

Interesting analysis done in R, about salaries of R developers broken down by country, featuring salary range and median salary. 

The dataset consists of survey answers from nearly 90,000 respondents. About 5,000 of them reported using R for “extensive development work over the past year”. The first filter used reduces the dataset from 88,883 respondents to 5,048. The second filter excludes students, hobby programmers and former developers. This reduces the dataset to 4,047 respondents. The third filter excludes unemployed and retired respondents and the dataset is further reduced to 3,871 respondents. Finally, we exclude respondents from an unknown country and respondents with unknown or zero salary.

Check out Tomaz Weiss’s detailed post which dives into these numbers for United States respondents.

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Python and R Data Reshaping

Published 2019-09-10 by Kevin Feasel

John Mount takes us through a couple of data shaping packages:

The advantages of data_algebra and cdata are:

– The user specifies their desired transform declaratively by example and in data. What one does is: work an example, and then write down what you want (we have a tutorial on this here).
– The transform systems can print what a transform is going to do. This makes reasoning about data transforms much easier.
– The transforms, as they themselves are written as data, can be easily shared between systems (such as R and Python).

Let’s re-work a small R cdata example, using the Python package data_algebra.

Click through for the example.

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Exploratory Data Analysis with ExPanDaR

Published 2019-09-04 by Kevin Feasel

Joachim Gassen walks us through the ExPanDaR package in R:

The ‘ExPanDaR’ package offers a toolbox for interactive exploratory data analysis (EDA). You can read more about it here. The ‘ExPanD’ shiny app allows you to customize your analysis to some extent but often you might want to continue and extend your analysis with additional models and visualizations that are not part of the ‘ExPanDaR’ package.

Thus, I am currently developing an option to export the ‘ExPanD’ data and analysis to an R Notebook. While it is not ready for CRAN yet, it seems to work reasonably well and I would love to see some people trying it and letting me know about any bugs or other issues that they encounter. Hence, this blog post.

Looks like an interesting package. H/T R-bloggers

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