Native Math Libraries And Spark ML

Zuling Kang shares with us how we can use native math libraries in netlib-java to speed up certain machine learning algorithms in Apache Spark:

Spark’s MLlib uses the Breeze linear algebra package, which depends on netlib-java for optimized numerical processing.  netlib-java is a wrapper for low-level BLASLAPACK, and ARPACK libraries. However, due to licensing issues with runtime proprietary binaries, neither the Cloudera distribution of Spark nor the community version of Apache Spark includes the netlib-java native proxies by default. So without manual configuration, netlib-java only uses the F2J library, a Java-based math library that is translated from Fortran77 reference source code.

To check whether you are using native math libraries in Spark ML or the Java-based F2J, use the Spark shell to load and print the implementation library of netlib-java. The following commands return information on the BLAS library and include that it is using F2J in the line, “com.github.fommil.netlib.F2jBLAS,” which is highlighted below:

In the examples here, you can get about a 2x difference using the native math libraries versus without, so although that’s not an order of magnitude difference, it’s still nothing to sneeze at.

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