Ginger Grant shows how to create a new SSIS or SSRS project for SQL Server 2016:
In this version of SQL Server Data Tools, Microsoft has finally addressed the common problem of needing to maintain multiple versions of SSIS packages for the different server versions. No longer do you need three different applications to maintain code for SQL Server 2012, 2014 and now 2016. All of these versions are supported with SSDT for Visual Studio 2015. SQL Server will detect which version the code was last saved in so that you don’t have to worry about accidently migrating code. You also have the ability to create an SSIS package in 2012, 2014 or 2016. To select the version you want, right click on the project and select Properties. Under Configuration Properties->General as shown in the picture, the TargetServerVersion, which defaults to SQL Server 2016, has a dropdown box making it possible to create a new package in Visual Studio 2015 for whatever version you need to support. Supporting the ability to write for different versions, is a great new feature and one which I am really happy is included in SSDT for Visual Studio 2015.
I’m also glad that Microsoft has made this move. It is no fun having two or three different versions of Visual Studio installed because some component requires an older version.