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Category: Visualization

Visualizing Linear Regression Results

Published 2018-07-26 by Kevin Feasel

Bernardo Lares gives us a few ways of interpreting visually a linear regression result in R:

The most obvious plot to study for a linear regression model, you guessed it, is the regression itself. If we plot the predicted values vs the real values we can see how close they are to our reference line of 45° (intercept = 0, slope = 1). If we’d had a very sparse plot where we can see no clear tendency over that line, then we have a bad regression. On the other hand, if we have all our points over the line, I bet you gave the model your wished results!

Then, the Adjusted R2 on the plot gives us an easy parameter for us to compare models and how well did it fits our reference line. The nearer this value gets to 1, the better. Without getting too technical, if you add more and more useless variables to a model, this value will decrease; but, if you add useful variables, the Adjusted R-Squared will improve.

We also get the RMSE and MAE (Root-Mean Squared Error and Mean Absolute Error) for our regression’s results. MAE measures the average magnitude of the errors in a set of predictions, without considering their direction. On the other side we have RMSE, which is a quadratic scoring rule that also measures the average magnitude of the error. It’s the square root of the average of squared differences between prediction and actual observation. Both metrics can range from 0 to ∞ and are indifferent to the direction of errors. They are negatively-oriented scores, which means lower values are better.

I like this approach to explaining models.

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Scatterplots For Multivariate Analysis

Published 2018-07-18 by Kevin Feasel

Neil Saunders declutters a complicated visual with a simple scatterplot:

Sydney’s congestion at ‘tipping point’ blares the headline and to illustrate, an interactive chart with bars for city population densities, points for commute times and of course, dual-axes.

Yuck. OK, I guess it does show that Sydney is one of three cities that are low density, but have comparable average commute times to higher-density cities. But if you’re plotting commute time versus population density…doesn’t a different kind of chart come to mind first? y versus x. C’mon.

Let’s explore.

Simple is typically better, and that adage holds here.

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Building Cone Plots In Plotly

Published 2018-07-12 by Kevin Feasel

The Plotly blog shows how to use Python to build 3D cone plots using Plotly:

This plot uses an explicitly defined vector field. A vector field refers to an assignment of a vector to each point in a subset of space.

In this plot, we visualize a collection of arrows that simply model the wind speed and direction at various levels of the atmosphere.

3-D weather plots can be useful to research scientists to gain a better understanding of the atmospheric profile, such as during the prediction of severe weather events like tornadoes and hurricanes.

Sometimes a 3D plot is the best answer.  When it is, this looks like a good solution.  H/T R-bloggers

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Sorting When Your Measure Is Not In The Visual

Published 2018-07-12 by Kevin Feasel

Kasper de Jonge shows us different ways of sorting a visual by some unrelated measure:

So lets start with the simple one, I want to sort a chart on a measure not part of the visual. Let’s take this visual:

Now instead of sorting by OrderQuantity I want to sort by the ListPrice. The trick here is to make the measure part of the query, and one way you can do that is by adding it to the tooltip

Read on for examples for charts as well as matrices.

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Building A Gantt Chart With ggplot2

Published 2018-07-09 by Kevin Feasel

Sebastian Sauer shows us how to build a gantt chart in R:

Of importance are only Task, Previous_Evnet and Duration. In addition, we need an overall start date (“2019-03-01” in this case). Each subsequent task is assumed to follow neatly its predecessing event.

Our job is to compute the start date and end date of task given that we know the initial start date and the durations. As said, this procedure is based on the assumption that there is a frictionless and gapless sequence of tasks.

Read on for a code-heavy example.  I’ve always had a soft spot in my heart for gantt charts.

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Graphics In R

Published 2018-06-28 by Kevin Feasel

David Smith is following the kerfuffle that Edward Tufte unleashed on Twitter recently:

While graphics guru Edward Tufte recently claimed that “R coders and users just can’t do words on graphics and typography” and need additonal tools to make graphics that aren’t “clunky”, data journalists at major publications beg to differ. The BBC has been creating graphics “purely in R” for some time, with a typography style matching that of the BBC website. Senior BBC Data Journalist Christine Jeavans offers several examples, including this chart of life expectancy differences between men and women:

I think Tufte’s off base here.

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Scatterplot Matrices

Published 2018-06-08 by Kevin Feasel

The Plotly folks show off scatterplot matrices in Python:

The scatterplot matrix, known acronymically as SPLOM, is a relatively uncommon graphical tool that uses multiple scatterplots to determine the correlation (if any) between a series of variables.

These scatterplots are then organized into a matrix, making it easy to look at all the potential correlations in one place.

SPLOMs, invented by John Hartigan in 1975, allow data aficionados to quickly realize any interesting correlations between parameters in the data set.

In this post, we’ll go over how to make SPLOMs in Plotly with Python. For extra insights, check out our SPLOM tutorial in Python and R.

fff

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Why Nobody Is Reading Your Report

Published 2018-05-30 by Kevin Feasel

Stephanie Evergreen really cuts to the chase:

Here’s the hard truth: Your report probably sucks. Mine sure did. The heart of your content is likely fine, maybe even helpful. But, if you are anything like the hundreds of reports I see every year, the entire set of cultural norms we have somehow developed around reporting is just setting us up for failure, writing a destiny where no one is reading the report.

Why? Let me lay out the most common issues I see and propose some strategic solutions.

There’s an emphasis here on academic papers but it also applies to corporate work too.

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Taking Screenshots With R

Published 2018-05-29 by Kevin Feasel

Abdul Majed Raja shows us how to take screenshots of webpages using R:

webshot package provides one simple function webshot() that takes a webpage url as its first argument and saves it in the given file name that is its second argument. It is important to note that the filename includes the file extensions like ‘.jpg’, ‘.png’, ‘.pdf’ based on which the output file is rendered. Below is the basic structure of how the function goes:

library(webshot)

#webshot(url, filename.extension)
webshot(“https://www.listendata.com/”, “listendata.png”)

If no folder path is specified along with the filename, the file is downloaded in the current working directory which can be checked with getwd().

Now that we understood the basics of the webshot() function, It is time for us to begin with our cases – starting with downloading/converting a webpage as a PDFcopy.

This isn’t something I’d expect to do every day, but I could see it being useful as part of a notebook to give the user a sanity check, like if a webpage or data set has a last updated timestamp that you want to check.  H/T R-Bloggers

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WVPlots 1.0.0

Published 2018-05-29 by Kevin Feasel

John Mount announces WVPlots 1.0.0:

Nina Zumel and I have been working on packaging our favorite graphing techniques in a more reusable way that emphasizes the analysis task at hand over the steps needed to produce a good visualization. We are excited to announce the WVPlots is now at version 1.0.0 on CRAN!

The idea is: we sacrifice some of the flexibility and composability inherent to ggplot2 in R for a menu of prescribed presentation solutions. This is a package to produce plots while you are in the middle of another task.

I like this idea:  I know the kind of plot I need and just want to throw something together for myself to give me an idea of the underlying data.

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