Category: R

John Mount has a nice essay on overfitting:

What is meant by “overfitting” is: the estimated f() will tend to show off or over perform on the data used to fit, train, or construct it. I have some notes on this sort of selection bias here: https://win-vector.com/2020/12/10/overfit-and-reversion-to-mediocrity-the-bane-of-data-science/.

Selecting a model that “looks good” is enough to bias the model’s evaluation with respect to the data set we said it “looked good” on. So even when using unbiased methods, the data scientist can introduce bias by choosing to use one model (say the one fit by logistic regression) over another (say using using an observed prevalence everywhere as a probability prediction).

The way I talk about overfitting is to say that we’ve trained a model which latches onto the particulars of the training data set. To the extent that the particulars of the training data set are matched by the broader world, that’s “fitting.” To the extent that the particulars of the training data set are unique to that data set and are not generally applicable, that’s “overfitting.” Generally, I don’t have any more time to get into what this means, but John dives into the topic in an accessible way.

Petr Baranovskiy wants to take us through the key concepts of correlation analysis, starting with basic theory:

When I was learning statistics, I was surprised by how few learning materials I personally found to be clear and accessible. This might be just me, but I suspect I am not the only one who feels this way. Also, everyone’s brain works differently, and different people would prefer different explanations. So I hope that this will be useful for people like myself – social scientists and economists – who may need a simpler and more hands-on approach.

These series are based on my notes and summaries of what I personally consider some the best textbooks and articles on basic stats, combined with the R code to illustrate the concepts and to give practical examples. Likely there are people out there whose cognitive processes are similar to mine, and who will hopefully find this series useful.

This is clear and well-written, so check it out even if you feel like you have a solid understanding of the topic.

Akhila takes us through the intuition of how Naive Bayes works:

Usually we use the e1071 package to build a Naive Bayes classifier in R. And then using this classifier, we make some predictions on the training data.

So probability for these predictions can be directly calculated based on frequency of occurrences if the features are categorical.
But what if, there are features with continuous values? What the Naive Bayes classifier is actually doing behind the scenes to predict the probabilities of continuous data?

Click through for the answer. Also, Naive Bayes isn’t Bayesian, but that’s not important.

The Stats Guy takes a look at averages:

In this diagram, there are a bunch of numbers and a single question mark. Behind the question, is also a number. The known numbers are the same as in our friend v above.

Our task is as follows:

– Make a guess on what that mystery number could be. And,
– If we can’t get it right, then reduce, as much as possible, the error we incur on our guess.

This is a well-written explanation of an important concept. H/T R-Bloggers