The first thing to say is that if you don’t specify a join algorithm in the sixth parameter of Table.Join (it’s an optional parameter), Power Query will try to decide which algorithm to use based on some undocumented heuristics. The same thing also happens if you use JoinAlgorithm.Dynamic in the sixth parameter of Table.Join, or if you use the Table.NestedJoin function instead, which doesn’t allow you to explicitly specify an algorithm.
There are going to be some cases where you can get better performance by explicitly specifying a join algorithm instead of relying on JoinAlgorithm.Dynamic but you’ll have to do some thorough testing to prove it. From what I’ve seen there are lots of cases where explicitly setting the algorithm will result in worse performance, although there are enough cases where doing so results in better performance to make all that testing worthwhile.
That behavior is the same as if you decided to start writing
INNER LOOP JOIN or
INNER HASH JOIN for your queries. In the right spot, you may have knowledge the optimizer doesn’t have and can make performance faster, but a lot of the time the approach will be a bit too heavy-handed and end up a net degradation of performance.